My driver side window don't work, it makes a clicking sound when i try to wine it up or down. the passenger side works on both the master switch and the passenger side. i check the fuses its ok. could anyone help please its cold outside..thanks

If other windows are working then its not the fuse. Either bad master switch or wire break or motor.

Is the battery failing,if so it will, as you said
mess with the GEM Module & it's relays &
give you just what your getting.
You may have a bad door switch as well a battery

Need to get a wiring diagram. Buy a book and follow the wiring schematic. It should help you out majorly. Can't really work on electrical issues without one.

It sounds like everything else and the wiring is okay, only that button on the driver's switch is not working. I would try a new switch, if you see nothing wrong with the electrical plug for it when you take it off.
If that down wire was broken somewhere from the driver switch to the passenger door, I don't think the driver's switch would work for it either way, up or down. And same, neither would the passenger switch work. I think the button for down is not making contact somehow, and right in the switch.

It sounds like it could be the window solenoid, or the window motor. It's unlikely the switches on both doors are bad. Check the solenoids and motors...

There could be a lock controller somewhere that is not working.
I don't have a wiring diagram for your truck.

Generally, the power window motors are grounded thru the doors, or the switches provide ground. In your case the motors are probably grounded thru the doors.
The master switch "overrides" the door switch so you have extra wires that do the same thing. The E wire probably gives the door switch power and the A and C are up and down. The B and D are override circuits from the master that bypass the door switch.
Sometimes the motor is grounded thru the switch then thru the door.

try going to passenger door window switch and reset it by going down and holding for extra 3to5 seconds after window is down, do same to go up, then try doing it with master switch don forget to hold it longer, this is a reset also used on Scion vehicles, hope it helps.
Good luck

I just bought a 2007 accord and its having the same problem. Was there any resolution?

No.The drivers master power switch is probably bad.YOu will have to perform a test on the three other switches on the master. Check for power and ground when you push each putton.If the master switch fails the test you need a new master switch.

It does sound like you have a short in the master switch on the drivers side. If the passengers switch does not work, check the left master switch and the window lock switch.