The 3.1 has been known to have fuel injector issues. Were you able to verify that cyl 2 was getting spark from the coil?If it is not getting spark the ignition module may have an issue but if it does have spark most likely the problem is with the injector or injector plug.
Before I went too much further throwing parts at it, I'd have fuel pressure tested. Not uncommon for low fuel pressure to starve a cylinder or 2 and have a misfire code come up. Should only take mechanic about 5-10 minutes to verify low or o.k. , then you can eliminate that possibility.
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