I need a manual installation guide for a Spy 5000m C1 MODEL

you can try out some guide from reliable-store
they also provide live chat feature for instant help and it's very useful
using that I fixed my own excavator 5-6 times without any other help
plus free so whats harm in not getting

Might try removing or disconnecting the alarm to see if you have tripped an anti-theft circuit on the bike. If you have then you'll need to refer to your owner manual or local Honda dealer.
If the bike works fine without the alarm then I would reset the alarm. I found the manual on Google pretty quickly

In your local shop - a single AAA is all the Spy 5000m remote fob needs.

The Spy 5000m is a great alarm but difficult to install.
You can get installation and user insttructions from this
site.
http://userguides.50webs.com/spy_5000m.htm

You need to adjust the tachometer sensing wire, it usually wraps around a spark plug wire so I can sense when the car starts. On my spy alarm, the wire was grey. Hope this helps.

First, you need to jailbreak your iPhone, and then you can install the software step by step with the guide.
How to install iPhone Spy