OK you harddrive is infected with Malware. This Malware creats shortcuts of each folder and Hide the all those your main folder.
You can scan your Hardrive with fully updated Anti Virus apllication .
To see all your original folder you can enable your Shown hidden File option from your Folder option--View--uncheck show hidden files and folder--and uncheck hide protected operating system files.
Here is the step to unhide your all files and folder in one go.
Step 1:
Click on the below link and download the file "AutorunExterminator"
http://en.kioskea.net/download/download-11613-autorun-exterminator Extract it --> Double-click on "AutorunExterminator" --> Plug your Hard drive now.
This will remove the autorun.inf files from your flash drive and also from drives.
Step 2:
Click on "Start" -->Run --> type cmd and click on OK.
Here I assume your flash drive letter as G:
Enter this command.
attrib -h -r -s /s /d g:\*.*
You can copy the above command --> Right-click in the Command Prompt and
paste it.
Note : Don't forget to replace the letter g with your flash drive letter.
Now press "Enter".
this should solve your problem.
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