Thread bunching
Unfortunately, having done all the right things to do in that situation to elminate potential causes, it is most likely at this point that the machine has been thrown out of time, which is going to require professional help. The only other thing you will want to check is to take the hook out of the machine (that's the piece that your bobbin case fits into) and see if a needle stricke may have caused a rough spot on it, which could be catching the thread and causing your "clumping" situation.
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