There is a sidestand/kickstand switch. When this is activated (stand down) and you select gear it cuts the engine out. It is to prevent riding off with stand down. The switch sits on the bottom of the bike in the spray and mud when riding so gets clogged up. Spraying with (for example) WD40 cleans it up. pushing and pulling on the button will free it up as well. Failing that, disconnect or short it as a last resort. Easier done as a 2 man job (or woman lol) where one holds bike up or leans it away from the stand and the other gets down low and plays with the switch.
Good luck.
SOURCE: Engine stalls when engage in any gear from neutral.
CHECK THE SIDE STAND SAFETY SWITCH IS OPERATING
SOURCE: install digi gear indicator
This site has the manual for the 2005 model R6 so thw wiring should be the same.... good luck!
http://www.carlsalter.com/download.asp?fileid=089097109097104097095089090070045082054084095050048048053095109097110117097108115046122105112
SOURCE: error code yamaha r6 2007 51 how can i erase it?
could be a safety shutdown by computer, only your dealer can erase the code....and then you'll find out whats wrong...and why the computer doesn't want you starting and damaging the bike.......Good Luck to you friend....Tim
SOURCE: 2000 yamaha r6
This sounds like it could be any of 3 things. Ignition system, Air system & fuel system. Most commonly you'll find that the carburettors just need to be cleaned as this problem sounds related.
I would suggest thoroughly cleaning the carburettors as a good starting point. Along the way though I would also check the battery, the fuel tap and filter, the air filter and air ducts. As any of these components are blocked, will cause a similiar symptom. You should find it run better afterwards, if not I can help moving on to check the next possible cause. If you need help of how to get to the carbs and how to clean them, let me know.
SOURCE: r6 2nd gear slipping
if its slipping out of 2nd gear good chance will need gearbox strip and maybe changeing thr selecter fork or drum
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