I just bought a used
An impact screw driver with the correct size tip may salvage the screws enough tho get them out.
If no luck, next step is drill the heads off the screws, with aprox 5mm drill bit, if you drill enough just to remove the heads, when the cover is off, there will be enough screw left to remove with pliers.
Worst case, try the bike dismantlers for a newclutch cylnder or cover, many of the yamahas are the same.
And as for the original problem, the seal is probably gone in the clutch slave cylnder down on the engine, as the fluid has gone somewhere, and its quite common for that age bike.