I have a 98 honda accord 5 spd it has a 4cyl motor vtech i just need to know how to fix a miss fire in cylinder 2 and wich one is cylinder 2

Cylinder #2 is the the second spark plug counting from the right to left.
EX.Below are spark plug on engine
engine
-------------------------------
' (oil cap) '
' (4) (3) (2) (1) '
'_________________'

Your misfire can be cause by couple of things but the cheapest way that you can try to fix your car is to do a tune up by replacing:
1)all spark plugs
2)do a oil change
3)spark plug wires
3)distributor cap and rotor

note misfire can be cause by:
1.bad gas
2.spark plug and/or wire
3.distributor cap and/or rotor
4.valve adjustment
5.injector
6.off timing
7.ECM
8.bad wiring(power, ground or feed line)