Some vehicle manufacturers use the A/C compressor to put a load on the engine, especially upon initial start up in cold weather, to get the engine temperature up to it's designed operating temp quicker. If your engine temp is dropping below normal when you have the heater running, this may be a reason. Not familiar with Jeep setup.
Many modern air systems in cars use the air conditioner even in cold weather to remove humidity from the air and help limit fogging of windows.
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