If I understand correctly, your water level inside the bowl is 3 or 4 inches from the top of toilet seat?
Sounds peculiar to have that water level since you would get splashing etc.
That is not sanitary, and would be a code violation.
Look at side profile of tank.
Look at porcelain behind bowl and you can see outline of "s trap."
This is the internal trap that each toilet has built in.
Purpose of trap is to a) set water level inside bowl and b) just like a sink trap, seal pipe from sewer air from entering home.
Photo shows trap on sample toilet, with line showing approximate level of water inside bowl.
Since photo is at an angle, the line appears to go downward instead of level. Again the line is approximation, and photo intended to show where you can look on your toilet.
Your tank should have similar s-trap feature. From the feature on your tank, you can see what level water is intended to be inside bowl.
Some more expensive tanks, outline of s-trap is not apparent.
If the water level is so high that you experience unsanitary conditions, this is a code violation, and toilet should be replaced.
Quick web search turned up Kohler contact page:
http://www.us.kohler.com/general/contact.jsp
KOHLER Customer Care at
Phone: 1-800-4KOHLER (1-800-456-4537)
Hours: 8:00 AM - 5:00 PM (Central Time) Monday to Friday
You can refer Kohler to this link on Fixya so they can clearly understand issue.
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