2001 EXC have the same cooling system regardless of a 4 stroke or a 2 stroke, this technology have stayed until 2006
Here is the manual for 2006:
https://www.ktmdealer.net/uploads/models_tech_datasheets/8303F3_OM_EN.pdf
then your water pump assy should look like this
http://www.ktmcyclehutt.com/ktm-parts/productimages/77335955044_lg.jpg
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