The CHS fan is the chasis fan, this fan should be seated on the case somwhere, the best way to check this is to take the side panel of the pc and power it up to see if any fans are not working, if you find a fan that is not working turn back off and check the connector of the fan is connected properly to the motherboard connector and try again, if still the same you may have to invest in a new fan. They are relitively cheep to buy from your local pc store.
When installing the new fan ensure you place back into the case blowing out, not in, this way you will ensure the heat is being dispersed away from any heated componants.
Being as you have reseated the heat sink and cpu(processor)fan and changed the heat sink compond, as long as you fully covered the metal of the processor then that shouldnt be the problem of the shuting down. Because the bios knows it has a chasis fan it may shut down to protect the motherboard and componants.
hope this helps.
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