here is a manual for your subwoofers: http://mobile.jlaudio.com/pdfs/8-12W6_BDS.pdf
use the wiring diagram for 1.5? (1.5ohm) with 2 speakers. the diagram for 3 speakers will not work, because it would bring the load down to 1 ohm, and the amp cannot go below 1.5 ohm.
to set up the amp:
under "preamp output section", on the "output mode" switch, select "amp filter"
to set up the levels: start with the amp gain pretty far down- with the input voltage on low for line level outputs from the deck, and on high for speaker outputs from the deck. now turn your cd deck as far up as it will go until it distorts, then turn the cd deck down to just where it stops distorting. now, you can start to turn up the gain on the amp.
on the filters, youll prolly want the cutoff filter around 100hz @ 24db slope. start with the infrasonic filters off, but, if you do get into them, try centering between 30 and 60hz on either, and, possibly dropping the cutoff filter to 80hz.