Hi,
Okay it seems that for some reason the battery change scrambled the brain of the t-stat... that happens...
To fix it you will now have to go into the "Installer Menu" and reset the paramenters of the t-stat.
If you have the Installe brochure then you can look in there and then set the tistat for "heat/cool" and also to "auto fan" and then to "auto changeover" These should get you back to cooling again...
No big problem, just a small programming issue...be patient and if you do not have you book don't worry... you can look it up here...this tip tells you where and how to find any of the Honeywell t-stat manuals.
Manual Honeywell How to Find Honeywell Manuals
http://www.fixya.com/support/r3894275-manual_honeywell_find_honeywell_manuals
heatman101