The cooling fan will not come on. Tested fan separately, it works. I by passed the heat sensor as Clymer suggested and ground the heat sensor wire to the frame to try to make the fan come when the ignition was turned on but it did not come on. Jumped the Fan Motor ''+'' lead from the entrance point into the Junction Box straight to battery ''+'' by passing Fan relay in Junction Box and the fan came on. I'm think Junction Box is bad but how do I make sure before I spend $100 on a new box?

Use the process of elimination, you know the fan is good, now you should test the heat sensor. when the bike is cold the heat sensor should not let power past it to the fan, but when the bike is warm then the sensor should then let the power through, so test it either with a test light or an ohm meter! If the sensor is bad then thats the problem if not then check the wiring diagram to make sure there is nothing else on the same circut! If you need further help just drop me a line!

Clymer should be able to help you confirm good/bad. Keep the temp sensor jumped out and then try to bypass relay?