Does it keep running till the batt is flat? It could be the aircon condenser fan running - on the left as you stand in front of the car. This is a common prob with A3s of this age.
I have a '05 3.2L Quattro V6 and suffered the same prob. The batt is in the boot of the V6 and is sealed like Fort Knox so impossible to disconnect. After about 3 days with this the fan running constantly and having to put a charger on it every night I let the batt run completely flat to try and reset the complete system - no DIS lights - no starter motor clicks - DEAD. Then I jump started it and the prob disappeared completely. Everything is working perfectly ncluding the aircon. That was 4 days ago and 'touch wood' I've had no probs since. I know this won't work for everyone but it's worth a try before forking out £300+ for a new condenser fan unit. Good luck!
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