Door ajar light - power windows and alarm

Maybe the convenience (or comfort) control module under the driver seat carpet also got water damaged? If you have VAGcom (VCDS), run diagnostic scan and post here.

Door ajar switch problem more then likely or wiring issue . The BCM - body control module won't turn off interior light , let door lock because it think's the door is open . The door ajar switch is a input to the BCM .

The first thing would be to have it checked for DTC'S - diagnostic trouble codes . Also check with an enhanced scan tool to see if the BCM shows ajar switch data (open or closed ? Do you know about body electronics ?
Body Control Module
The various BCM input and output circuits are described in the corresponding functional areas indicated on the BCM electrical schematics. The Body Control Module functions include the following:
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A/C compressor request. Refer to Air Temperature Description and Operation

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Remote Function Control. Refer to Keyless Entry System Description and Operation

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A/C cooling Fan. Refer to Air Delivery Description and Operation

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Audio Delay Power. Refer to Radio/Audio System Description and Operation

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Exterior and interior lighting control. Refer to Exterior Lighting Systems Description and Operation

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Daytime running lights (DRL)

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Automatic lighting control

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Fog lamps

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Interior lighting. Refer to Interior Lighting Systems Description and Operation

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Battery rundown protection (Inadvertent Power). Refer to Interior Lighting Systems Description and Operation

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Chimes. Refer to Audible Warnings Description and Operation

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Key-In-Ignition

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Head Lamps On

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Seat Belt Not Fastened

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Turn Signal On

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Park Brake Warning

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Door Ajar Warning

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Check gages

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Gage control. Refer to Instrument Cluster Description and Operation in Instrument Panel, Gages, and Console.

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Instrument cluster indicator control. Refer to Instrument Cluster Description and Operation in Instrument Panel, Gages, and Console.

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Theft deterrent. Refer to Theft Systems Description and Operation .

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Engine coolant level sensing. Refer to Cooling System Description and Operation .

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Washer solvent level sensing. Refer to Wiper/Washer System Description and Operation in Wipers/Washer Systems.

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Key-in-ignition sensing. Refer to Audible Warnings Description and Operation in Instrument Panel, Gages, and Console.

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Seat belt use sensing. Refer to Seat Belt System Description and Operation .

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Brake fluid level sensing.

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Parking brake state sensing.

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Rear compartment interface. Refer to Power Door Locks Description and Operation

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Horn interface.

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Door lock interface. Refer to Power Door Locks Description and Operation

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Bulb Check. Refer to Instrument Cluster Description and Operation in Instrument Panel, Gages, and Console.

What make , model and year vehicle ?

Usually it is in the drivers window controller.There is a module that usually goes bad.

https://s33.postimg.org/f0juccxm7/interior_lamps.jpg

Click on the link.
Found that fuse for interior lamps. It's located in the smart junction box.

had the same problem. no radio, navigation interior lights etc. replaced 20 amp fuse labeled "back up" in the engine compartment fuse box and all checks good.

Look for a fuse under the hood in main fuse box labeled rear view. Replace it and should fix problem unless you have a short.

check power window relay and the interior light relay.

there is a switch in each door that senses the door is open, it is called the door ajar/courtesy light switch (imagine that), they stick and have this problem, replace it.

Same problem with an '03 Golf--remote entry, power windows, and interior lights stopped working. This was easily fixed by replacing fuse #14, (10 amp), located in the driver's side fuse block.