How can I program my new keys that came with locksmart ignition lock cylinder switch from autozone is there a way I can do it my self on my 06 Honda civic

Is the key and switch a matched pair? There is a chip in the key (black plastic grip). It must communicate with the switch for the car to start ...
https://www.rockauto.com/en/catalog/honda,2007,accord,2.4l+l4,1433638,ignition,ignition+lock+cylinder,10041

Here's a Autozone repair guide link on ignition lock cylinder. Repair Guides Instruments Switches Ignition Lock Cylinder AutoZone com

Greetings, I read your question and I think Reliable-Store can help you in this. Here's the site link.
Best Manuals

You need a new ignition switch ASAP.

Ignition what ? Switch ,Ignition lock cylinder ? New keys ? do they have the transponder pellet in the head. Do you have a security lit flashing when trying to start the vehicle ?
SECTION 419-01: Anti-Theft - PATS 1999 Mustang Workshop Manual GENERAL PROCEDURES Procedure revision date: 11/06/1998 Key Programming -Erase All Key Codes and Program Two Keys
Special Tool(s) > New Generation STAR (NGS) Tester or equivalent
418-F048 (007-00500) NOTE: This procedure is used when a customer needs keys programmed into the system and does not have two programmed ignition keys available. This procedure is also useful when programmed ignition key(s) have been lost or the ignition switch assembly has been replaced, and it is desired to erase key(s) from the passive anti-theft system (PATS) memory.
NOTE: This procedure will erase all programmed ignition keys from the vehicle memory and the vehicle will not start until two keys have been reprogrammed to the vehicle.
NOTE: Two PATS encoded keys with the correct mechanical cut must be available to perform this procedure. One or both of them may be the customer's original keys.
NOTE: If additional keys are to be programmed, refer to Key Programming - Program a Key Using Two Programmed Keys. If the remaining keys are with the customer and are not available with the vehicle, then instruct the customer to refer to the Owners Guide under the "Programming Spare [SecuriLock ® (North America), Safeguard ® (U.K.) or PATS for all other markets] Keys Procedure" for instructions on programming the remaining keys.

1. Turn the ignition switch from OFF to RUN.

1. Enter New Generation STAR/Service Bay Diagnostic System (NGS/SBDS). Follow the SECURITY ACCESS PROCEDURE to obtain security access.

1. From NGS/SBDS menu, select IGNITION KEY CODE ERASE.

1. NOTE: Do NOT select any additional commands from this menu.
   Turn the ignition switch to OFF and disconnect NGS.

1. Insert the first encoded key into the ignition lock cylinder and turn the switch to RUN for three seconds.

1. Insert the second encoded key into the ignition lock cylinder and turn the switch to RUN for three seconds.

1. The vehicle should now start with both ignition keys.

You'll need to take to the dealer

There are a couple different brand names of aftermarket key lock cylinders. LOCKSMART has one for auto transmission and for manual transmission. Part Number LC65620 For the auto, Part Number LC65580 for manual. These are available through Autozone and O'Reilly's. BORG WARNER has makes these also The part numbers are the same. (These are avilable through O'Reilly's and Advance Auto. It may be helpful to let you know that these are probably all manufactured by the same manufacturer that makes the MOTORCRAFT (Ford) cylinders. They just sell to different distributors, who put their names on them.

Note that these are the part numbers for the key and tumbler assembly only. The complete ignition switch assembly ( tumbler, barrel, switch ) is also available through these same suppliers.

groan.....gunna need a bit more info. but i'll try. What portion of the ignition was ripped out? The tumbler + switch? If so, you might need to get the car's system resent to recognize that it has a new ignition put in. Sime vehicles have a theft prevention system in place to prevent the vehicle from running if its been hot wired. Your best bet would be to replace the damaged ignition components (You did not mention if you did or not). If it still doesn't work after you have replced all of the ignition components. You can try to reset the vehicle (doesn't work on all) disconnect negative battery terminal and go back into vehicle and press down the brake pedal for about 30 seconds then reconnect battery and try it....good luck, hope this helps

This is what the tech manual says.....

Ignition Lock/Switch REMOVAL & INSTALLATION

1. Disconnect the negative battery cable. If equipped with an air bag, wait at least 90 seconds before working on the vehicle. CAUTION
   Some models covered by this manual may be equipped with a Supplemental Restraint System (SRS), which uses an air bag. Whenever working near any of the SRS components, such as the impact sensors, the air bag module, steering column and instrument panel, disable the SRS, as described in Section 6.
   
2. Remove the lower steering column cover. Unfasten the ignition switch connector under the instrument panel.
3. Remove the screws which secure the upper and lower halves of the steering column cover.
4. Turn the lock cylinder to the ACC position with the ignition key.
5. Push the lock cylinder stop in with a small, round object (cotter pin, punch, etc.). NOTE: On some vehicles, it may be necessary to remove the steering wheel and combination switch first.
   
6. Withdraw the lock cylinder from the lock housing while depressing the stop tab.
7. To remove the ignition switch, unfasten its securing screws and withdraw the switch from the lock housing. To install:
   
8. Align the locking cam with the hole in the ignition switch and insert the switch into the lock housing.
9. Secure the switch with its screw(s).
10. Make sure both the lock cylinder and column lock are in the ACC position. Slide the cylinder into the lock housing until the stop tab engages the hole in the lock.
11. Install the steering column covers and connect the ignition switch wiring.
12. Connect the negative battery cable.

The fab key it self may be bad at the unlock switch it self and the fab key needs to be replaced. You can try to reset the fab lock if you like and see if that addresses the issue. 
Important 
Once the Keyless entry receiver enters the programming/diagnostic mode, the programming of the first transmitter erases all previous transmitter programming information. You must then program all of the transmitters. 
Program only 1 vehicle remote control door lock receiver at a time. If you program multiple receivers simultaneously, the same transmitter could possibly be programmed to more than 1 remote control door lock receiver.

Perform the following steps:
Sit in the vehicle driver's seat. (actually it’s much err from the front pass seat) 
Remove the ignition key from the ignition lock cylinder. 
Close all of the vehicle's doors. 
Remove the MALL PGM fuse from the fuse panel. Refer to Electronic Diagnosis in Body and Chassis. 
Turn the ignition lock cylinder to the ACC position. 
Turn the ignition lock cylinder OFF, then back to ACC within 1 second. 
Open and then close any vehicle door. You will hear a chime when the remote control door lock receiver enters the programming/diagnostic mode. If you do not hear a chime, start again at step 1.

Important 
After 7 seconds, you may hear a chime confirming successful synchronization. After approximately 14 seconds, you will hear a chime confirming successful programming.

Press and hold the transmitter LOCK and UNLOCK buttons simultaneously for 14 seconds. 
Repeat step 8 in order to program each additional transmitter. 
Remove the ignition key from the ignition lock cylinder. 
Install the MALL PGM fuse back into the fuse panel. Refer to Electrical Diagnosis in Body and Chassis. 
Validate that all the transmitters that were programmed operate properly. Refer to Keyless Entry System Operation

Good luck and hope this helps. If you have problems you can try asking the service department at the dealer where you bought the car or where you have the car serviced. Simple things like this most of the time will not cost much and may even be free of charge if you have a good relationship with them.
Good luck and hope this helps.

Removal

1. Disconnect battery ground cable. Remove the steering column shroud by removing the four or five self-tapping screws. Remove tilt lever (if so equipped).

1. Remove instrument panel lower steering column cover.

1. Disconnect the ignition switch electrical connector.

1. Rotate ignition key lock cylinder to the RUN position.

1. Remove the two screws retaining ignition switch.

1. Disengage the ignition switch from the actuator.

Installation

1. Adjust the ignition switch by sliding the carrier to the switch RUN position. NOTE: A new replacement switch assembly will be set in the RUN position as received.
   

1. Check to ensure that the ignition key lock cylinder is in the RUN position. The RUN position is achieved by rotating the key lock cylinder approximately 90 degrees from the LOCK position.

1. Install the ignition switch into the actuator. It may be necessary to move the switch slightly back and forth to align the switch mounting holes with the column lock housing threaded holes.

1. Install retaining screws. Tighten to 5.6-7.9 Nm (50-69 lb-in).

1. Connect electrical connector to ignition switch.

1. Connect battery ground cable. Check ignition switch for proper function, including START and ACC positions. Also, make certain that the column is locked in the LOCK position.

1. Install instrument panel lower steering column cover.

1. Install the steering column trim shrouds and tilt lever (if so equipped).