The passenger, right and left rear windows will not go down when controlled from the drivers master window switch. Any thoughts?

Replace the master switch assembly.

Rear Passenger Power Window Operation
The rear passenger power window switches receive battery voltage through the window lockout control circuit if the window lockout function is disabled. Ground for the rear passenger power window motors is supplied through normally closed up and down contacts of both the rear passenger power window switches and the driver power window switch. When the either rear passenger power window switch is placed in the down position, the power window motor down control circuit is switched to 12 volts and is applied to the down side of the rear passenger power window motor. Since the other side of the rear passenger power motor is connected to ground through the normally closed up contacts of both the rear passenger and driver power window switches, the window travels down. By placing the rear passenger power window switch in the up position, the polarity of the power window motor is reversed and the window travels up.
The rear passenger power windows can also be controlled from the driver power window switch.

Did you try pushing the lock out switch on the drivers master switch ?

The window master switch has a lock out on it, make sure it's off otherwise suspect the master switch in the drivers door.

Did the switch work before replaced battery ? 2008 CTS ? Cadillac ? These switches are inputs to a control module , DDM - driver door module . a computer of sorts . A lot of thing's can go wrong with these systems , broken power or ground circuits inside the rubber boot from the body to the driver door . Communication problems between control modules etc... Plus the power windows don't use fuse's , has a circuit breaker for front windows - PWR/WNDW circuit breaker 25 amp located in the fuse box under the back seat , Fuse's are used for rear windows - two 15 amp fuse's LT/REAR an rear ,both are in the rear fuse box under back seat. These rear windows are controlled by the BCM - body control module .

The power windows system consists of the following components:
• Driver door module (DDM)--GMLAN device that receives and transmits messages and signals for window functionality. The DDM contains the driver door switch (DDS) which is integrated into the module. The DDS contains the driver, front passenger, RR and LR window and window lockout switches.
• Passenger front door module (PDM)--GMLAN device that receives and transmits messages and signals for window functionality. The PDM contains the front passenger door switch (PDS) which is integrated into the PDM. The PDS contains the front passenger window switch.
• Left rear power window switch--Provides switched voltage and ground window switch signals to the left rear window motor for left rear passenger window operation
• Right rear power window switch--Provides switched voltage and ground window switch signals to the right rear window motor for right passenger window operation
• Left front power window motor--Contains position sensors and a module that receives signals from the DDM and provides a status signal to the DDM
• Right front power window motor--Contains position sensors and a module that receives signals from the PDM and provides a status signal to the PDM
• Left rear power window motor--Contains position sensors and a module that receives signals from the left rear power window switch
• Right rear power window motor--Contains position sensors and a module that receives signals from the right rear power window switch
• DRIVER DR MOD fuse (15-amp)
• PDM fuse (15-amp)
• PWR WNDW Circuit Breaker (25-amp) -- front
• LT/REAR/WNDW fuse (15-amp) -- rear
• REAR/WNDW fuse (15-amp) -- rear


Power Window Operation
The driver and front passenger doors are equipped with power window motors that contains its own module. Each power window motor receives a hot at all times battery supply voltage and constant ground source. When the right front passenger window switch on the DDS is activated to the up or down position, the DDM will interpret the signal and send a GMLAN serial data message to the PDM. Upon receipt of the message, the PDM will send a signal to the front passenger window motor module on the GMLIN serial data circuit. The window motor module will then supply battery voltage and ground to the window motor to drive the window motor to the up or down position.
The DDM communicates via the GMLAN serial data circuit with the body control module (BCM) to control the rear window functions from the driver master window switch. The BCM is hard wired to each rear power window switch with circuits for window up, window down, and an enable circuit. The rear window switches contain internal logic that when supplied with voltage from the BCM over the enable circuit will driver the appropriate window in the direction commanded.
The rear power window switches are supplied with battery voltage from individual right and left WNDW fuses located in the rear fuse block. When a rear power window switch is activated to the DOWN position, voltage is applied to the motor down circuit and the motor up circuit serves as the path to ground. The window motor will drive in the downward direction until the switch is released or the window has fully opened. When the window switch is activated to the UP position, voltage is applied to the motor up circuit and the motor down circuit serves as the path to ground. Ground for the left rear power window switch is supplied at G200 and the right rear power window switch receives ground at G201.

The power locks work the same .

After replacing the driver door switch (DDS) or passenger door switch (PDS), perform the programing procedure.

If you don't know any of what i posted your best bet , have a qualified repair shop check it out .

They hooked into wiring they shouldn't have >
Power Window System Components
The power window system consists of the following components:
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Driver door module (DDM)

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Passenger door module (PDM)

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Body control module (BCM)

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LR power window switch

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RR power window switch

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Window up and window down relays in each of the rear passenger window switches

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Window lockout switch

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Reversible power window motors in each of the doors (circuit breaker protected)

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LT DOOR CB 25A (System power for left rear window)

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RT DOOR CB 25A (System power for right rear window)

Power Window System Controls
The power window system will operate anytime the retained accessory power (RAP) system is active or when the ignition switch is in the ACCY or ON position.
The DDM contains 4 power window switches which are integral components. Closing any of the normally open, rocker type switches provides the DDM with a request for power window operation. The switches for the 2 front windows have 3 positions Up, Down and Express Down, while the switches for the rear windows have only 2 positions, Up and Down. Each of these switches and their positions is a direct input into the DDM. Upon receiving a request for power window operation, the DDM, transmits a class 2 message indicating the switch and it's changed position.
The PDM contains a single power window switch that is an integral component. Closing of this normally open, rocker switch provides the PDM with a request for the front passenger power window operation. The switch for the front passenger window has 2 positions Up and Down. Each of these switch positions is a direct input to the PDM.
The 2 rear passenger doors have there own switches. Each of the switches contain a power window up and down relay. A switch activation alone can control the up and down functions of the rear windows. However the BCM, upon receiving a class 2 message from the DDM, can control the set of relays which will activate the rear window motors.

Does you truck have Memory Seats ? There are 2 options of power seat systems available in full size trucks. The first is 6 way driver and passenger power seats without memory. The second is an 8-way driver seat plus 4-way lumbar with memory, heat and optional cool function.
If you replaced the circuit breaker , did you check for B+ voltage at the switch ? If you have memory seats there is a control module that is in the mix.
For the power windows same thing here ,the BCM - body control module is involved .A factory Tech 2 scan tool is still the best tool to use ,checking data parameters .
The switch for the front passenger power window has 2 positions UP and DOWN, and it's position is a direct input into the PDS. Upon receiving a request for power window operation (switch activation), the PDS supplies voltage to the power window motor right front up or down circuit and grounds the opposite and the power window motor runs to drive the window UP or DOWN.
The front passenger power window can also be operated from the driver master control. The front passenger window switch on the driver master control has 2 positions UP and DOWN and it's position is a direct input into the DDS. Upon receiving a request for front passenger power window operation, the DDS transmits a GMLAN message indicating the changed switch position. When the PDS receives this message, the PDS supplies voltage to the power window motor right front up or down circuit and grounds the opposite and the power window motor runs to move the window UP or DOWN.
GMLAN - is a data bus communication network that vehicle modules talk together on.
Rear Passenger Power Window Operation (RPO A31/AN3/DL3)
The body control module (BCM) monitors the window UP/DOWN command from the DDS. When the rear window UP or DOWN command is received, the BCM sends a signal to the appropriate rear window switch. The rear window switches continuously monitor the up and down signal circuits, if no function is being commanded, the signal voltage is at approximately B+ voltage. If the UP or DOWN function is commanded, the BCM signal voltage drops approximately 5 volts and the appropriate rear window switch will then command the window in the UP or DOWN direction.
Your best bet would be to take your truck to a GM dealer !
Your best bet

If

You can't put up the front passenger window with it's own switch ? Did you check the POWER WINDOW RELAY in the instrument panel fuse / relay box ? An you checked POWER fuse 30amp same fuse box ? All window switches have direct power from power window relay !
Fuse Block - Instrument Panel
Left of the Steering Column, behind the storage Compartment
P/W Relay
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Sunroof Switch Assembly, Window Switch - Left Front, Window Switch - Left Rear, Window Switch - Right Front, Window Switch - Right Rear

Circuit breakers rearly fail an they reset them selfs . You could have broken wires inside the flex boot from the body to the drivers door . Taking the door panel off an check for B+ voltage to the switch an a good ground would be a good test to do. But first reading up on how these systems work would be good thing to do.
Power Window System Controls (RPO A31/AN3/DL3)
The power window system will operate anytime the Retained Accessory Power (RAP) system is active or when the ignition switch is in the ACCY or ON position.
The driver master control switches are integrated into the DDS. When a power window switch is activated in the up or down positions the DDS supplies power and ground to the window motor control circuits to drive the window motor in the required direction. Prior to activating a power window motor the DDS will supply the control circuit with a low current bias voltage in order to determine that a short to ground condition does not exist and during window motor operation the DDS continues to monitor the motor current to verify proper window motor operation.
The DDS controls the passenger window through a GMLAN message to the PDS. When a power window switch is activated in the up or down positions the PDS supplies power and ground to the window motor control circuits to drive the window motor in the required direction. Prior to activating a power window motor the PDS will supply the control circuit with a low current bias voltage in order to determine that a short to ground condition does not exist, and during window motor operation the PDS continues to monitor the motor current to verify proper window motor operation. (Scan tool support is available for this system)

Rear Passenger Power Window Operation (RPO A31/AN3/DL3)
The body control module (BCM) monitors the window UP/DOWN command from the DDS. When the rear window UP or DOWN command is received, the BCM sends a signal to the appropriate rear window switch. The rear window switches continuously monitor the up and down signal circuits, if no function is being commanded, the signal voltage is at approximately B+ voltage. If the UP or DOWN function is commanded, the BCM signal voltage drops approximately 5 volts and the appropriate rear window switch will then command the window in the UP or DOWN direction.
DTC B3819 00: Left Rear Window Up Control Circuit
DTC B3820 00: Left Rear Window Down Control Circuit
DTC B3822 00: Right Rear Window Up Control Circuit
DTC B3823 00: Right Rear Window Down Control Circuit

Having the vehicle checked for DTC'S mite be a good idea .

Not following you completely.
When you say driver side passenger window, you mean the driver side rear window ?
The window motors get power thru a power window control unit and thru the driver master switch.
You'll need a shop manual with the wiring diagrams to track down the problem.

well you can try "jumping" the correct wire to see if window got up or down... this will tell u if switch is bad... but I would just go but a new master switch... try that before you cause more damage..