Moonroof won't close. Stuck in vent mode

You need to remove the whole assembly and access why the glass panel is off track something's broken.

you need to remove the head liner to inspect. try pushing down on the corner that is stuck while trying to open. a lot of the time the back of the roof gets wedged against the roof roof.lol. and it needs to go down before it will go back

Something must be blocking its path. Check its path or liner.


Power Performance Chip

If this occured after trying to close the shade while the moonroof was opening, it is possible that the plastic tab that locks into the vent (and subsequently the rest of the moonroof) has been bent. I was having a similar problem where my vent would only go up on one side and stay closed on the other (and it would sometimes get stuck open). It would also prevent the rest of the moonroof from opening up. If this is the case, from what I can tell, there is no easy fix for this. Upon researching this problem, you are the only other person asking about it and zero fixes. For the time being, the vent can be closed by lifting up on one side to "unlock" the stuck tab and you should be able to put it down. After that, you should look up instructions to remove your moonroof glass to see if you can inspect the affected area to determine the cause. Here is a link that shows you how to remove the moonroof glass, but does not address the exact issue you describe.

use the manual override and close the roof glass...

towards the center of inside roof there is a plastic botton on the roof there is underneath that an Allen screw this is a manual close and open of the moon roof find an allen wrench that fits and turn to desiered position and your on your way

Check fuses and wiring. If all is good, I suggest carrying around towels and plastic wrap... Just kidding. If nothing works, take it to O'Reilly and have the computer checked. It could just be a burned motor, which is an entirely different story.

On EX and EX-V6 models:
The moonroof has two positions: it can be tilted up in the back for ventilation, or it can be slid back into the roof. Use the switch under the left dashboard vent to operate the moonroof. The ignition switch must be ON (II).
To tilt up the back of the moonroof, press and hold the center button. To close the moonroof, press and hold the top of the switch To open (slide back) the moonroof, press and hold the bottom of the switch. Release the switch when the moonroof gets to the desired position. Make sure everyone's hands are away from the moonroof before opening or closing it.
The moonroof has a key-off delay. You can still open and close the moonroof for up to ten minutes after you turn off the ignition. The key-off delay cancels as soon as you open either door. You must then turn the ignition ON (II) for the moonroof to operate.
Hope this helps.

Temporary Fix: unsnap off the access door in the overhead ceiling liner behind the sunroof opening;
Use a 4mm hexagon Allen wrench to wind it closed.